Marvin is able to export bitmap image files like JPEG, PNG, PPM and SVG vector graphics files. Restrictions:
2D defaults:
a
or+a
Aromatize. -a
Dearomatize. H or +H Add explicit Hydrogen atoms. Example: "mol:H" -H Remove explicit Hydrogen atoms. Example: "mol:-H" H_off
Do not show implicit Hydrogen labels. H_hetero
Implicit Hydrogen labels on heteroatoms only. H_heteroterm
Implicit Hydrogen labels on hetero- and terminal atoms (default). H_all
Implicit Hydrogen labels on all atoms. w...
h...
Image width and height in pixels. If only one from w and h is specified, then the other will have the same value. If none of them is specified, then their values are calculated from scale. If scale is not specified, then the default size is 200x200. scale...
Magnification. 1.54Å (C-C bond length) is scale pixels. atsiz...
Atom label font size in C-C bond length units. Default: 0.4
atsiz*1.54 Å = atsiz*scale points bondw...
Width of double bond in C-C bond length units. Default: 0.18
bondw*1.54 Å = bondw*scale pixels #rrggbb
Background color. Default: "#ffffff" #aarrggbb
Background color with alpha value. Default: "#ffffffff" mono
Black & white. cpk
Use CPK colors (default). shapely
Use the shapely color scheme. group
Coloring based on residue sequence numbers. atomset
Atom set colors. wireframe
Wireframe rendering style (default for 2D). wireknobs
Wireframe with knobs. ballstick
"Ball & stick" rendering style (default for 3D). spacefill
Spacefill rendering style. noantialias
Switch off antialiasing.
H_heteroterm,w200,h200,#ffffffff,cpk,wireframe
3D defaults: H_heteroterm,w200,h200,#ff000000,cpk,ballstick
Examples:
jpeg
Default settings: 200x200 pixels, white background (or black in 3D). jpeg:w100,#ffff00
100x100 JPEG with yellow background. jpeg:w100,h150
100x150 JPEG with default background.