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| Deprecated Fields | |
| chemaxon.formats.MdlCompressor.TEXTMODE
 as of Marvin 3.1, there is no possibility to do that  | 
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| Deprecated Methods | |
| JMView.isSetVisible(int)
 as of Marvin 3.3, replaced by isAtomSetVisible  | 
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| MView.isSetVisible(int)
 as of Marvin 3.3, replaced by isAtomSetVisible  | 
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| JMView.setSetColor(int, int)
 as of Marvin 3.3, replaced by setAtomSetColor  | 
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| MView.setSetColor(int, int)
 as of Marvin 3.3, replaced by setAtomSetColor  | 
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| JMView.setSetSeq(int, int, int)
 as of Marvin 3.3, replaced by setAtomSetSeq  | 
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| MView.setSetSeq(int, int, int)
 as of Marvin 3.3, replaced by setAtomSetSeq  | 
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| JMView.setSetVisible(int, boolean)
 as of Marvin 3.3, replaced by setAtomSetVisible  | 
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| MView.setSetVisible(int, boolean)
 as of Marvin 3.3, replaced by setAtomSetVisible  | 
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| chemaxon.struc.MolAtom.toString(int, int, CTransform3D, int[])
 as of Marvin 3.0, replaced by getAtomSymbol and getAtomLabels  | 
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| chemaxon.struc.sgroup.SuperatomSgroup.updateSgroupCrossings()
 as of Marvin 3.3, replaced by Sgroup.findCrossingBonds()  | 
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