Molecular Orbital calculations of Oxygen, Monofluoroamine, and M-Xylene

Jessica McGowan and Wesley Morioka

Abstract

    Molecules can be geometrically optimized with quantum calculations to find their: bond lengths, highest occupied molecular orbital, lowest unoccupied molecular orbital, electrostatic potential, and partial atomic charges. Data collected for each molecule was done on the ab initio theory, which calculates the best level of theory. The calculations come from the best level of theory of 6-21G, 6-31G and DZV.1 The level of theory are also able to predict the dipole moments occurring with in the molecule and an absorbance spectra of transitional energies. These quantum calculations were performed on Oxygen, Monofluoroamine, and M-xylene. The basis sets of AM1 generate the best level of theory for the dipole moment of Monofluoroamine, and the basis set of DZV to determine the best level of theory for the vibrational frequencies.

Introduction

    With present technological advancements have been made and computers can predict quantum calculations in a more simplified way compared to doing the calculations with paper and pencil, even though it is still feasible to do the calculations be hand. This is beneficial for calculations of larger molecules. Technology programs such as, Avogadro, MacMolPlt, Jmol, and GAMESS help aid with predicting properties of molecules without having to do long calculations. The properties that these programs assist with are: optimized geometry, the molecular dipole moment, vibrational frequencies, an absorption spectrum of transitional energies, and the molecular orbital structure of sigma and pi bonds with in the highest occupied and lowest unoccupied states.

    Each technology program was used for different aspects of the calculations. The program Avogadro is best used to build a molecular structure before it can be geometrically optimized.1 MacMolPlt is the most versatile program for performing quantum calculations. The program optimizes the geometry of the molecular structures, improves dipole moments by adding diffuse functions, calculates the potential energy compared to the bond length of the molecule, and calculates the absorption spectrum of transition energies. Jmol is also another beneficial program that can be used to display the calculations performed on the molecule. The program can display the different molecular orbitals in varying sigma and pi bond formations, the bond lengths and angles, the partial charges on each element within the molecular structure, the electrostatic potential, and the different vibrational spectrums in animation to observe the different vibrations occurring. The last program is GAMESS, which essentially performs all the calculations of each molecule.


Using the following hyperlinks for the calculated data of: OxygenMonofluoroamine, and M-Xylene.

Conclusion

    From the entire potential basis sets used the best results came from DZV. The DZV basis set had the most ideal calculation, especially for our larger molecule m-xylene. DZV was the best theory for our dipole moment of the polar molecule monofluoroamine, vibrational frequencies for the diatomic molecule oxygen and the motions associated with the vibrational spectrum.
    When using the programs to calculate the data there was some experimental error giving 6% in the bond length and 13.6% error in the vibrational frequency of oxygen. Another source of error stems from the dipole moment in monofluoroamine of 0.19%. A major benefit of doing computational data with the computer is it saves time in calculations for larger molecules. A disadvantage for doing the computations with computers is that the data is not consistent with each other and more data basis sets are needed to obtain improved results.

References

  1. Mihalick, J.; Gutow, J. Quantum Calculations 2015, p. 1-12
  2. Listing of experimental data for O2 (Oxygen diatomic) 2015, http://cccbdb.nist.gov/exp2.asp?casno=7782447 accessed on March 6,2016
  3. Oxygen 2016 https://en.wikipedia.org/wiki/Oxygen accessed March 6, 2016
  4. Igor Pro, version 6.37, WaveMetrics accessed on February 21, 2016
  5. Experimental data for NH2F (monofluoroamine) 2015 http://cccbdb.nist.gov/exp2x.asp?casno=15861059 accessed on March 6, 2016
  6. Monofluoroamine 2016 http://webbook.nist.gov/cgi/cbook.cgi?ID=C15861059&Units=SI&Mask=800#Electronic-Spec accessed March 6, 2016
  7. Calculated electric dipole moments for (monofluoroamine) 2016 http://cccbdb.nist.gov/dipole2x.asp accessed March 6, 2016
  8. Listing of experimental data for CH3C6H4CH3 (meta-xylene) 2015 http://cccbdb.nist.gov/exp2.asp?casno=108383 accessed March 6, 2016
      9. Benzene, 1,3-dimethyl- 2016 http://webbook.nist.gov/cgi/cbook.cgi?ID=C108383&Units=SI&Type=IR-SPEC&Index=3#IR-SPEC accessed March 6, 2016