Clicks
- Right click for pop-up menu.
(Control+click on Mac)
- Double click to view the structure in a separate window.
Hydrogens
- In View or the
pop-up menu, select the
Hydrogens submenu
to change the way H labels and atoms are shown.
- Add explicit hydrogens using
Edit ->
Explicit H atoms ->
Add.
3D features
- To start a static molecule spinning, select
Animation ->
Play in the pop-up or the
View menu.
- To start animating an XYZ sequence, select
Animation ->
Play.
- To stop spinning while continuing the animation, uncheck
Animation ->
Drag to Spin.
- Use the Display submenu to
select a rendering style from Wireframe,
Sticks,
Ball & Stick or
Spacefill.
- To generate bonds for an XYZ structure with a different bond length
cut-off, select
Edit -> Bonds
-> Regenerate.
Notes: The AWT applet does not have the
Animation menu and the
Edit -> Bonds
-> Regenerate menu item. These features are
only present in the Swing version. In the AWT version, animation can be
started or stopped by using the "Animate" checkbox.
Colors
- In View or the
pop-up menu, use the
Colors submenu to select monochrome or
CPK
coloring, or to change the background color.
Printing
- To print a molecule select Print ->
This Molecule in the pop-up menu.
- To print the visible molecules of a molecule table select
Print ->
All Visible in the pop-up menu or
Print in the File menu.
- To print all molecules loaded in a molecule table select
Print -> All
in the pop-up menu.
Note: The Print feature is only present in the Swing version.
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Mouse drag and navigation
- To rotate the structure, drag it with the mouse
(hold down mouse button while moving the pointer).
- To translate, zoom,
or rotate the structure:
- right click for the pop-up menu,
- select the Move submenu,
- select Translate,
Zoom,
Rotate, or
Rotate in 3D,
- drag the structure with the mouse.
- To translate without using the
menu, press Ctrl while dragging.
- To zoom without using the
menu, press Shift while dragging.
Drag & Drop
Molecules can be moved also between different Marvin windows,
or from a file manager to Marvin.
To perform a Drag & Drop operation,
- right click for the pop-up menu,
- select Translate
- drag the structure with the mouse
- drop it over another viewer cell or over a sketcher window
Notes:
1. D&D only works in the Swing version, in Java 1.2 or later.
2. Drop may not work in the JMView applet running in a browser window,
because drop events are received by the browser in that case.
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