# Jmol state version 11.8.20 2010-02-28 19:28; function _setWindowState() { # height 475; # width 484; stateVersion = 1108020; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; ambientPercent = 45; diffusePercent = 84; specular = true; specularPercent = 22; specularPower = 40; specularExponent = 6; statusReporting = true; } function _setFileState() { set allowEmbeddedScripts false; set autoBond true; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0.0 0.0 0.0}; set defaultLoadScript ""; set defaultVDW Jmol; set forceAutoBond false; set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set minBondDistance 0.4; set pdbSequential false; set pdbGetHeader false; set percentVdwAtom 20; set smartAromatic true; load /*file*/"HNF2_AM1_6-31G.log"; } function _setVariableState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlattice "{0 0 0}"; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowkeystrokes false; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set atompicking true; set atomtypes ""; set autobond true; set autofps false; set autoloadorientation false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondpicking false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawhover false; set drawpicking false; set dynamicmeasurements false; set ellipsoidarcs false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set fontcaching true; set forceautobond false; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set imagestate true; set isosurfacepropertysmoothing true; set justifymeasurements false; set loadatomdatatolerance 0.01; set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set measureallmodels false; set measurementlabels true; set messagestylechime false; set minbonddistance 0.4; set navigatesurface false; set navigationperiodic false; set navigationspeed 5.0; set pdbgetheader false; set pdbsequential false; set percentvdwatom 20; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showkeystrokes true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone false; set stereodegrees -5; set strandcountformeshribbon 7; set strandcountforstrands 5; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set useminimizationthread true; set usenumberlocalization true; set vectorscale 1.0; set vibrationperiod 0.5; set vibrationscale 0.5; set wireframerotation false; set zoomlarge true; #user-defined variables; # --no global user variables defined--; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13.0 SansSerif Plain; } function _setModelState() { measures delete; measure ({0}) ({1}); # distance 1.4214822 0.142 nm N1/1 #1 F2/1 #2; measure ({0}) ({2}); # distance 1.4214883 0.142 nm N1/1 #1 F3/1 #3; measure ({0}) ({3}); # distance 1.013182 0.101 nm N1/1 #1 H4/1 #4; measure ({4}) ({5}); # distance 1.4214823 0.142 nm N1/2 #1 F2/2 #2; measure ({4}) ({6}); # distance 1.4214884 0.142 nm N1/2 #1 F3/2 #3; measure ({4}) ({7}); # distance 1.013182 0.101 nm N1/2 #1 H4/2 #4; measure ({8}) ({9}); # distance 1.3956585 0.14 nm N1/3 #1 F2/3 #2; measure ({8}) ({10}); # distance 1.3956591 0.14 nm N1/3 #1 F3/3 #3; measure ({8}) ({11}); # distance 1.0045903 0.1 nm N1/3 #1 H4/3 #4; measure ({12}) ({13}); # distance 1.4001966 0.14 nm N1/4 #1 F2/4 #2; measure ({12}) ({14}); # distance 1.4001963 0.14 nm N1/4 #1 F3/4 #3; measure ({12}) ({15}); # distance 1.0075582 0.101 nm N1/4 #1 H4/4 #4; measure ({16}) ({17}); # distance 1.4027567 0.14 nm N1/5 #1 F2/5 #2; measure ({16}) ({18}); # distance 1.4027562 0.14 nm N1/5 #1 F3/5 #3; measure ({16}) ({19}); # distance 1.0077033 0.101 nm N1/5 #1 H4/5 #4; measure ({20}) ({21}); # distance 1.4035192 0.14 nm N1/6 #1 F2/6 #2; measure ({20}) ({22}); # distance 1.4035196 0.14 nm N1/6 #1 F3/6 #3; measure ({20}) ({23}); # distance 1.0060294 0.101 nm N1/6 #1 H4/6 #4; measure ({24}) ({25}); # distance 1.4028914 0.14 nm N1/7 #1 F2/7 #2; measure ({24}) ({26}); # distance 1.4028915 0.14 nm N1/7 #1 F3/7 #3; measure ({24}) ({27}); # distance 1.007172 0.101 nm N1/7 #1 H4/7 #4; measure ({28}) ({29}); # distance 1.4028914 0.14 nm N1/8 #1 F2/8 #2; measure ({28}) ({30}); # distance 1.4028915 0.14 nm N1/8 #1 F3/8 #3; measure ({28}) ({31}); # distance 1.007172 0.101 nm N1/8 #1 H4/8 #4; measure ({1}) ({0}) ({2}); # angle 102.73413 102.7 ¡ F2/1 #2 N1/1 #1 F3/1 #3; measure ({1}) ({0}) ({3}); # angle 101.286674 101.3 ¡ F2/1 #2 N1/1 #1 H4/1 #4; measure ({2}) ({0}) ({3}); # angle 101.28685 101.3 ¡ F3/1 #3 N1/1 #1 H4/1 #4; measure ({5}) ({4}) ({6}); # angle 102.73413 102.7 ¡ F2/2 #2 N1/2 #1 F3/2 #3; measure ({5}) ({4}) ({7}); # angle 101.286674 101.3 ¡ F2/2 #2 N1/2 #1 H4/2 #4; measure ({6}) ({4}) ({7}); # angle 101.28685 101.3 ¡ F3/2 #3 N1/2 #1 H4/2 #4; measure ({9}) ({8}) ({10}); # angle 106.487045 106.5 ¡ F2/3 #2 N1/3 #1 F3/3 #3; measure ({9}) ({8}) ({11}); # angle 105.550545 105.6 ¡ F2/3 #2 N1/3 #1 H4/3 #4; measure ({10}) ({8}) ({11}); # angle 105.550064 105.6 ¡ F3/3 #3 N1/3 #1 H4/3 #4; measure ({13}) ({12}) ({14}); # angle 104.4984 104.5 ¡ F2/4 #2 N1/4 #1 F3/4 #3; measure ({13}) ({12}) ({15}); # angle 103.68198 103.7 ¡ F2/4 #2 N1/4 #1 H4/4 #4; measure ({14}) ({12}) ({15}); # angle 103.68171 103.7 ¡ F3/4 #3 N1/4 #1 H4/4 #4; measure ({17}) ({16}) ({18}); # angle 103.59975 103.6 ¡ F2/5 #2 N1/5 #1 F3/5 #3; measure ({17}) ({16}) ({19}); # angle 102.24881 102.2 ¡ F2/5 #2 N1/5 #1 H4/5 #4; measure ({18}) ({16}) ({19}); # angle 102.24906 102.2 ¡ F3/5 #3 N1/5 #1 H4/5 #4; measure ({21}) ({20}) ({22}); # angle 102.959915 103.0 ¡ F2/6 #2 N1/6 #1 F3/6 #3; measure ({21}) ({20}) ({23}); # angle 102.70031 102.7 ¡ F2/6 #2 N1/6 #1 H4/6 #4; measure ({22}) ({20}) ({23}); # angle 102.69996 102.7 ¡ F3/6 #3 N1/6 #1 H4/6 #4; measure ({25}) ({24}) ({26}); # angle 103.46486 103.5 ¡ F2/7 #2 N1/7 #1 F3/7 #3; measure ({25}) ({24}) ({27}); # angle 102.48079 102.5 ¡ F2/7 #2 N1/7 #1 H4/7 #4; measure ({26}) ({24}) ({27}); # angle 102.480705 102.5 ¡ F3/7 #3 N1/7 #1 H4/7 #4; measure ({29}) ({28}) ({30}); # angle 103.46486 103.5 ¡ F2/8 #2 N1/8 #1 F3/8 #3; measure ({29}) ({28}) ({31}); # angle 102.48079 102.5 ¡ F2/8 #2 N1/8 #1 H4/8 #4; measure ({30}) ({28}) ({31}); # angle 102.480705 102.5 ¡ F3/8 #3 N1/8 #1 H4/8 #4; select *; set measures nanometers; font measures 15.0 SansSerif Plain; select measures ({null}); boundBox off; frank on; font frank 16.0 SansSerif Bold; set fontScaling false; } function _setFrameState() { # frame state; # modelCount 8; # first 1.1; # last 1.8; frame RANGE 1.1 1.8; animation DIRECTION +1; animation FPS 10; animation MODE ONCE 0.0 0.0; frame 1.1; animation OFF; } function _setPerspectiveState() { set perspectiveModel 11; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; boundbox corners {-1.1181846 -1.2126331 -0.17702001} {1.1181803 0.23058999 0.66827} # volume = 2.7282355; center {-2.0861626E-6 -0.49102157 0.24562499}; moveto 0.0 { -42 993 110 150.74} 100.0 0.0 0.11 {-2.0861626E-6 -0.49102157 0.24562499} 3.0751708 {0.0 0.0 0.0} -3.1591399 -7.0778327 0.0;; slab 100;depth 0; set spinX 0; set spinY 30; set spinZ 0; set spinFps 30; set navX 0; set navY 0; set navZ 0; set navFps 10; spin on; } function _setSelectionState() { select ({0:31}); set hideNotSelected false; } function _setState() { initialize; set refreshing false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setFrameState; _setPerspectiveState; _setSelectionState; set refreshing true; set antialiasDisplay false; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;